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Assigning bulk RNA-seq to pseudotime3 months ago
Introduction | Principle | Installing BLASE | Setting up the Single Cell Experiment | Finding the most descriptive genes with tradeSeq | Parameter Tuning for BLASE | Inspect Bin Choice | Inspect Genes Choice | Mapping Bulk Samples to SC with BLASE | Plotting Heatmap of Mappings | Plotting Detailed Correlation Maps | Plotting Summary Plots of Mappings | Session Info
blase 1.3.2Andrew McCluskey assign-bulk-to-pseudotime.Rmd
BLASE for annotating scRNA-seq8 months ago
Load Data | Prepare BLASE | Create BLASE data object | Select Genes | Calculate Mappings | Transfer Mappings | Session Info
blase 1.3.2Andrew McCluskey BLASE-for-annotating-scRNA-seq.Rmd
BLASE for excluding developmental genes from bulk RNA-seq8 months ago
Load Data | Prepare BLASE | Create BLASE data object | Select Genes | Calculate Mappings | Calculate DE genes | Phenotype + Development (Bulk DE) | Development (SC DE) | Remove Developmental Genes | Session Info
blase 1.3.2Andrew McCluskey BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd